Sequence Analysis           Regulation           Proteomics           Genes & Vectors

Molecular Biology Tools       Functional Genomics       ZAMP Tools

Sequence Analysis

Sequence retrieval
Sequence Annotation
Sequence Assembly
Sequence Similarity
 Sequence Processing
Gene Synthesis
Expasy Server
 Pattern & motif search
Alignments
Phylogenetics

Sequence retrieval                                                                                     

Searching GenBank
SRS Session
LoadSeq
Entrez
The UCSC Table Browser data retrieval tool
BLAST2SRS
BioRS
IUBio Biosequences
ORFer
Public SRS Servers
The UCSC SIRW

Sequence Annotation                                                                                 

Gene Pattern
GALA
Artemis
Ganesh
Apollo Genome Annotation

Sequence Assembly                                                                                    

Merger
Phrap, Consed
MIRA 2
ESSEMAlternative

Sequence Similarity                                                                                   

Sequence similarity search page at EBI
NCBI: BLAST notebook
BLITZ ULTRA Fast Search at EMBL
EMBL WWW services
BioSCAN online at U. North Carolina
Pattern scan of proteins or nucleotides
The PRINTS/PROSITE scanner (search motif databases with query sequence)
DARWIN system at ETH Zurich
PimaII find sequence similarity using dynamic programming
find sequence similarity using a hashcode comparison with a pattern library
PROPSEARCH (search based on amino acid composition, EMBL)
Sequence search protocol (integrated pattern search)
GenQuest (Fasta, Blast, Smith Waterman; search in any database)
SSearch (searches against a specified database)
BCM Search Launcher (makes multiple searches from one input)
Peer Bork search list (motif/pattern/profile searches)
PROSITE Database Searches (search for functional sites in your sequence)
PROWL-Protein Information Retrieval at Skirball Institute
CEPH genotype database
Advanced BLAST2 Search at EMBL

Sequence Processing                                                                                  

Splicing Gallery
EST-PAGE
ReadSeq (java)
sreFormat
Squizz
MView
Protein Duster
GenBank2XML
FmtSEQ

Gene Synthesis                                                                                            

DNA Builder
GeneArt GmbH

Expasy Server                                                                                             

ExPASy Proteomics tools

Pattern & motif search                                                                             

PatSearch

Alignments                                                                                                    

NCBI BLAST

Phylogenetics                                                                                              

PAUP
Phylip (Pasteur)
Phylogenetic tree prediction
Treeview
QuickTree
Tree-Puzzle
Phylodendron
Phylip
DAMBE
TreeFinder

Source : www.bisa.in
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