Sequence Analysis           Regulation           Proteomics           Genes & Vectors

Molecular Biology Tools       Functional Genomics       ZAMP Tools

Proteomics

Domains
Motif or Pattern Search
Functional Sites
Protein Engineering 		Protein Disorder
Mutant analysis
Topology
Signal Scan 		Trans-membrane domains
Molecular Modeling
Docking
Solvent Accessibility

Domains                                                                                                         

Protein Domain Profile Analysis
SMART
ProDom
Biozon Domain Prediction

Motif or Pattern Search                                                                            

ProfileScan
ProSA
BLOCKS
Gibbs Motif Sampler
MEME

Functional Sites                                                                                          

ELM
SCIDE
SCPRED
WebFEATURE

Protein Engineering                                                                                   

Disulfide by Design
PMD

Protein Disorder                                                                                         

GlobPlot
PDISORDER
DisEMBL 1.2 - predictors of protein
PONDR

Mutant analysis                                                                                           

MutaProt

Topology                                                                                                       

TOPS

Signal Scan                                                                                                   

Predict Protein
SignalP-Version2
Signal Scan
TargetP
Signal search analysis server

Trans-membrane domains                                                                        

DAS-domain prediction
Topology
TMAP
TmPRED
HMMTOP
TBBPred

Molecular Modeling                                                                                   

UCSF Chimera
Aqua server
NCBI SCWRL
NCBI Biotech Validation Suite for Protein
MaxSprout

Docking                                                                                                          

Software for Protein-Protein Docking
List of Docking Programs

Solvent Accessibility                                                                                 

CASTp
RVP-Net v2.0
ASAView
POPS

Source : www.bisa.in
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