Sequence Databases
Genomics
RNA
Proteins
Transcriptomics
Enzymes
Different Databases
The major sequence databases are listed down here.
EMBL Nucleotide Sequence Database
TIGR Gene Indices
NCBI Reference Sequence Project
A major catalogue of all the databases is listed here
DBcat
TIGR Gene Indices
ACLAME
Genetic Codes
Entrez Gene
VectorDB
ASDB
Databases having information about genes are listed below
GeneDBRegulonDB
DoTS
HuGeMap
EPConDB
STD Sequence Databases
ACeDB
ORFanage
Genew
GO
IUBMB Nomenclature database
PANTHER
UMLS
COG
COGENT
CORG
DEG
EGO
FusionDB
GOLD
KEGG
The major RNA databases are listed down here.
ARED
16S
5s rRNA
miRNA registry
GtRDB: The Genomic tRNA Database
ncRNA: Noncoding RNAs Database
Real Time PCR Primer Sets- Database of validated primer sets for quantitative PCR.
Ribosomal Database Project II
RNABase
siRNA Database
The RNA Modification Database
5'-UTR and 3'-UTR of eukaryotic mRNAs
Base pair classification
Database of ribosomal crosslinks
European ribosomal RNA database
Exon-Intron Database
FUGOID (Functional Genomics of Organelle Introns)
Genecensus
Genomic tRNA Database
Internal Ribosome Entry Sites (IRES)
Mobile Group II Introns Database
Intron- Exon Knowledge Base
Intron statistics
snoRNA Database (2'-O-ribose methylation)
tmRNA database [1] [2] [3]
SRPDB (Signal Recognition Particle Database)
RNA Structure Database
SEDB (structural exon database)
Ribosomal RNA Mutational Database
RAD (RNA Abundance Database)
RAG (RNA as graphs database)
RAPAD (RNA and Protein Abundance Database)
RPG (ribosomal protein gene database)
SEGE
SELEX DB
snoRNA-LBME-db
PACdb (PolyA Cleavage Site and 3'-UTR Database)
Prokaryotic 16s rRNA signature database
Rfam (non-coding RNA families)
Aptamer database
HuSiDa
HyPaLib
NONCODE
RISSC
The major protein databases are listed down here.
Swiss-prot
PDB
Pandora
PIR
OWL
MODBASE
Xpro
EXProt
Conformational Angles DataBase of Proteins
A Library of Protein Family Cores
Amino Acids Sequence Database (PRF/SEQDB)
BIOINFO BANK
Cytokine Family Database
InterPro
MHCPEP
PIR-NREF
PMD
PROTONET: Automatic hierarchical classification of proteins
PROW, Protein Reviews on the Web
REBASE
SPTR
The WD-repeat Family of Proteins
TRANSFAC
UniProt
Protein Domains
CDD - Conserved Domain Database
DOMO
Pfam
ProDom
PROSITE
DBSubLoc
NMPdb
NOPdb
TMPDB
ASC
CopS
FunShift
PRECISE
SBASE
AARSDB
CuticleDB
Histone Database
The major transcriptomics databases are listed down here.
Genevestigator
Muscle Specific Regulatory Elements
The major enzymme databases are listed down here.
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